Latest research projects, publications, and talks
Whole Wheat and Bran Cereal Affects Microbiome Stability [journal]
Posted
Abigail Johnson, Mo Houtti (Ph.D. student), Anna Saboe, Katie Koecher, Ravi Menon, Dan Knights (professor)
Current Developments in Nutrition
Calprotectin (S100A8/A9) is an Innate Immune Effector in Experimental Periodontitis [journal]
Posted
Karen F Johnstone, Yuping Wei, Peter D Bittner-Eddy, Gerrit W Vreeman, Ian A Stone, Jonathan B Clayton (postdoctoral associate), Cavan S Reilly, Travis B Walbon, Elisa N Wright, Susan L Hoops (Ph.D. student), William S Boyle, Massimo Costalonga, Mark C Herzberg
Infection and Immunity
Screening of large-scale genetic interaction networks [patent]
Posted
Raamesh Deshpande (Ph.D. 2013), Justin Nelson (Ph.D. 2019), Chad L Myers (professor), Scott William Simpkins (Ph.D. 2018)
Environmental robustness of the global yeast genetic interaction network [journal]
Posted
Michael Costanzo, Jing Hou, Vincent Messier, Justin Nelson (M.S. student), Mahfuzur Rahman (Ph.D. student), Benjamin VanderSluis (researcher), Wen Wang (researcher), Carles Pons, Catherine Ross, Matej Ušaj, Bryan-Joseph San Luis, Emira Shuteriqi, Elizabeth N. Koch (Ph.D. student), Patrick Aloy, Chad L. Myers (professor), Charles Boone, Brenda Andrews
Science
A method for benchmarking genetic screens reveals a predominant mitochondrial bias [journal]
Posted
Mahfuzur Rahman (Ph.D. student), Maximilian Billmann (post-doctoral associate), Michael Costanzo, Michael Aregger, Amy HY Tong, Katherine Chan, Henry N Ward, Kevin R Brown, Brenda J Andrews, Charles Boone, Jason Moffat, Chad L Myers (professor)
Molecular Systems Biology
Identification of candidate susceptibility genes to Puccinia graminis f. sp. tritici in wheat [journal]
Posted
Eva C Henningsen, Vahid Omidvar, Rafael Della Coletta, Jean-Michel Michno, Erin Gilbert, Feng Li, Marisa Miller, Chad L Myers (professor), Sean P Gordon, John P Vogel, Brian J Steffenson, Shahryar F Kianian, Cory D Hirsch, Melania Figueroa
Frontiers in Plant Science
Microbiome based systems, apparatus and methods for the exploration and production of hydrocarbons [patent]
Posted
Rob Knight, Ajay Kshatriya, John Ely, Paul Henshaw, J Gregory Caporaso, Dan Knights (professor), Ryan Gill
Imputation of Spatially-resolved Transcriptomes by Graph-regularized Tensor Completion [journal]
Posted
Zhuliu Li (Ph.D. student), Tianci Song (Ph.D. student), Jeongsik Yong, Rui Kuang (associate professor)
PLOS Computational Biology
Learning multi-way associations across biological networks [thesis]
Posted
Zhuliu Li (Ph.D. 2021)
Targeted Chemical-Genetic Screen Platform for Identifying Drug Modes-of-Action [preprint]
Posted
Kevin Lin (Ph.D. student), Maximilian Billmann (post-doctoral associate), Henry Ward (Ph.D. student), Ya-Chu Chang, Anja-Katrin Bielinsky, Chad L. Myers (professor)
Preprint of accepted article for the Journal of Clinical and Translational Science