Latest research projects, publications, and talks
Hierarchical Canonical Correlation Analysis Reveals Phenotype, Genotype, and Geoclimate Associations in Plants [journal]
Posted
Raphael Petegrosso (Ph.D. 2019), Tianci Song (Ph.D. student), Rui Kuang (associate professor)
Plant Phenomics
A large-scale comparative study of isoform expressions measured on four platforms
Posted
Wei Zhang, Raphael Petegrosso (Ph.D. 2019), Jae-Woong Chang, Jiao Sun, Jeongsik Yong, Jeremy Chien, Rui Kuang (associate professor)
BMC Genomics
Genetic interaction mapping and exon-resolution functional genomics with a hybrid Cas9–Cas12a platform [journal]
Posted
Thomas Gonatopoulos-Pournatzis, Michael Aregger, Kevin R Brown, Shaghayegh Farhangmehr, Ulrich Braunschweig, Henry N Ward, Kevin CH Ha, Alexander Weiss, Maximilian Billmann (researcher), Tanja Durbic, Chad L Myers (professor), Benjamin J Blencowe, Jason Moffat
Nature Biotechnology
Skp, Cullin, F-box (SCF)-Met30 and SCF-Cdc4-Mediated proteolysis of CENP-A prevents mislocalization of CENP-A for chromosomal stability in budding yeast [journal]
Posted
Wei-Chun Au, Tianyi Zhang, Prashant K Mishra, Jessica R Eisenstatt, Robert L Walker, Josefina Ocampo, Anthony Dawson, Jack Warren, Michael Costanzo, Anastasia Baryshnikova, Karin Flick, David J Clark, Paul S Meltzer, Richard E Baker, Chad Myers (professor), Charles Boone, Peter Kaiser, Munira A Basrai
PLoS Genetics
Single-cell gene expression analyses reveal distinct self-renewing and proliferating subsets in the leukemia stem cell compartment in acute myeloid leukemia [journal]
Posted
Karen Sachs, Aaron L Sarver, Klara E Noble-Orcutt, Rebecca S LaRue, Marie Lue Antony, Daniel Chang, Yoonkyu Lee, Connor M Navis, Alexandria L Hillesheim, Ian R Nykaza, Ngoc A Ha, Conner J Hansen, Fatma K Karadag, Rachel J Bergerson, Michael R Verneris, Matthew M Meredith, Matthew L Schomaker, Michael A Linden, Chad L Myers (professor), David A Largaespada, Zohar Sachs
Cancer Research
Predicting diabetes clinical outcomes using longitudinal risk factor trajectories [journal]
Posted
Gyorgy J Simon (Ph.D. 2008), Kevin A Peterson, M Regina Castro, Michael S Steinbach (researcher), Vipin Kumar (professor), Pedro J Caraballo
BMC Medical Informatics and Decision Making
BURST enables mathematically optimal short-read alignment for big data [preprint]
Posted
Gabriel Al-Ghalith, Dan Knights (professor)